Scaffold Ga0153697_1120

Overview

Basic Information

• Taxon OID: 3300011334
• Scaffold ID: Ga0153697_1120
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 27108
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (68.75%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Daesunglee, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6746111
  • Long. (^o): 127.3841278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017968	Metagenome	237	Y
F029755	Metagenome	187	Y
F065786	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_112014	F065786	AGG	MTKDDLINLLRMTGAQEASIEAVCAAYDAGWNDALEDYEKRLVVLPFEKDTIDSFGCFIKSAKK*
Ga0153697_112021	F029755	AGG	MTEFKLHYYFDDVVSYDNGTTLENVKVGYDYYPVLTNYPHAPDYAEIYDVFVFNLKGDDISCDLPLAEFQHIMSETKIHHARMLKEKNEI*
Ga0153697_112026	F017968	N/A	MKLQQSLIGSEKASNLATLSSQERLNLREIMRQTEAMEWIRRYRKKALEEGRGEAQYWWQQTLLDIAKKRGQAAADDLRKRMNEQKDKK*