Scaffold Ga0153697_1119

Overview

Basic Information

• Taxon OID: 3300011334
• Scaffold ID: Ga0153697_1119
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 27232
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (17.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Daesunglee, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6746111
  • Long. (^o): 127.3841278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009003	Metagenome / Metatranscriptome	324	Y
F011136	Metagenome / Metatranscriptome	294	Y
F027408	Metagenome	194	N
F043894	Metagenome	155	N
F053068	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_111915	F011136	N/A	MDRPRQDVEDIVCGGKVEAYVNRALWLSWHSNRSDYAIKYRKYYELHVIEQANESKQDETWIGAFIDGEYLYSAIGRMHEFDAILLRLYSKPDFNYKELSEQTGIPYPYLRTSIHRAIKRIREYVQLQRAAINQD*
Ga0153697_111918	F043894	N/A	MRKQNQLNGLIARTLGSKAALLRAMQRSNTPITKKTLYNWCMDYRTIKIAQLVNLAKAMDVPVCEVINSITIKNEGDE*
Ga0153697_111926	F027408	N/A	MKAYDKQRETELLRKLFVLTAKRSMRPAMSDNMAMRLIFEELLLLTDKDEYKL*
Ga0153697_111935	F009003	N/A	MKAKEKAWQLYSNYFDIIENGKQEGDLVDAHIKALNAALYCVDEALVNAPTDIVNDFDGTGEYYSVKAYYMHVKNELLRLSNYDAKAAESVKQ*
Ga0153697_111936	F053068	N/A	METTKRETAIRRLHIALKKRFQGQAIKMPWAEMEGFLKAVEGIELTNIHDAYNDGYRDGESGLPNKTQEQ*