Scaffold Ga0153697_1113

Overview

Basic Information

• Taxon OID: 3300011334
• Scaffold ID: Ga0153697_1113
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 28135
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (41.30%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Daesunglee, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6746111
  • Long. (^o): 127.3841278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002621	Metagenome / Metatranscriptome	542	Y
F005024	Metagenome / Metatranscriptome	414	Y
F005633	Metagenome / Metatranscriptome	394	Y
F006107	Metagenome / Metatranscriptome	381	N
F006262	Metagenome / Metatranscriptome	377	Y
F009398	Metagenome / Metatranscriptome	318	N
F010611	Metagenome / Metatranscriptome	301	N
F012771	Metagenome / Metatranscriptome	277	Y
F050368	Metagenome	145	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_111314	F002621	N/A	MEKHPRLSRTIWLIALLDCLGCQMTKVVLVPSGDPVMLAKPTRASVYGFDKDKKLVGPSTVVLPAGWYALPKN*
Ga0153697_111316	F009398	N/A	VTIIGSSLQQGMTVLQQMLGAPMFIWEGSSIRCIPAMVTDANTPVPGGFQDNVASRILVKFSDWKTWDSTLVTMDTTLYTLDQGTEFSRLLKEDGYYLLQENTDRIALTFCKPRPVVGRTLIYQGRTLRILSCRVDASGAYYSLELGAKTR*
Ga0153697_111317	F005024	GAGG	MTVDSSKFDAAMKAYLLQTSRDLHKAVNSRFFYLMVRLFVLVPPKSPAQERIRIGDYLSKPMGDINRKSKKTGKRIGKSRLLRRVHLIAQAKETKAGRRGLYGTQMKQAASAIYRKALGSVGYLRSGVVKIIRIYNRGFRQYDKPKWKPLVKPPGYKPPGKTNAALLSLADQYGLPAENVAVHKGTKARGIQAVPGFNPTASVVMTAGVADNQYNRVAMIYNQAMQKAMDDELAELTNHMTEAMLQNGKVLEDNGIAIK*
Ga0153697_111318	F006107	GGA	MNAVALRAELAVADYLAAADWSASGAGTPTCLTSYSRGLYDDPDEQDVMPNFPRLVVSTNSARPVQRTDLTCELEIAVELQLSADDTDEADVLTTVQVLDNRILPLFDDTGASTLNAPSNDASGPFTAQFAAPLDFGAASISNRSRTFTRTFTLYCSATL*
Ga0153697_11132	F010611	AGGAG	MTQREYAKHAGVSHGYVTQLAAKGMPMHSPEAADAWRKKNIRAKSTTQHIETPPTPEPTTIEQEGPYRPAEASNPIDTATAAIDSPPGAYERQRQIERAAYDLAVDALRGGRADAGRLVAIHAAAAKNLTSARDEVIAQAEKERRLVSGDWVRRVMQEHDGAVASLLKAMPKQLSGRISPHDPEHCEIELTRWVQEVALKTLHNTDPWKS*
Ga0153697_111330	F050368	N/A	METQDMINEEEVRRLPLWKDWIDRNEHRLAYGLTVTTEEMEAALEEKANSMAFQMAAHNIRVLLRQRGMNFSQRGLRGAGFQILPPNTNADEMEHLNRVALNSLKASVILGTKTNLNLLSDCERKRHESVTEKMAHRLALLGRSNVGLGQEIAKQITQ*
Ga0153697_111333	F012771	GGAGG	VTKDKKPTEKVFIVSAETHRRLKEYAKRKGFKLQYVADEAVAEYLQRKESK*
Ga0153697_11134	F006262	N/A	VFTFTVAIKRAYLRSVYSALGGATLLAALTSKVIAAASVIESGQVVRSTSSSDVSVEFAEPGKGAPTPSEMVEMWESLIADYDLAVYLLGQDGIAAPTDTQIFNKMLAVVLVATTSYGGDFSNFRREGTIRTGMT*
Ga0153697_11137	F005633	N/A	MRIATTISVDKAGKSKIVAGPEIDAAAQRADFNTAKIAEGSKLILWIQGSIAPKVRKG*