Scaffold Ga0153697_1110

Overview

Basic Information

• Taxon OID: 3300011334
• Scaffold ID: Ga0153697_1110
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 28285
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Daesunglee, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6746111
  • Long. (^o): 127.3841278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010601	Metagenome	301	Y
F021491	Metagenome / Metatranscriptome	218	Y
F023804	Metagenome	208	Y
F036595	Metagenome	169	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_111018	F010601	N/A	LSQELRAGKVPVCIREDYTVYLEFFRGNLWIHVDIKRWSSGVKKDCLKSIALIENLIGKPLVALIREEDIKLARFAKSFGWSEKCQISLLDGSKAFIYTNKV*
Ga0153697_111022	F036595	AGG	MIELLRELLLARANRPKPTVEEVEVQVWAFVVRAITVMVLGIAFGVLYLIGFEKQDAELAPIDGVFLEILKAIAFMGVGTMGGISGRKASAAIAKAIVGEDDATK*
Ga0153697_11107	F023804	AGG	MTETLYKFNCEVEGVELDCLLEYEPEELNHGEAPDFPACMNLVNAFCGDIDIAHLLMQSIVDHICEEALTKFNSESDE*
Ga0153697_11109	F021491	N/A	MSVQKKIEEMVLGYLKAAEGKARIMSPQDIAKLVSEAAHKGAMMGYDAGMQMARRAHGKELEIAELTVKELTERVKELEMQMIVQQ*