Scaffold Ga0153697_1107

Overview

Basic Information

• Taxon OID: 3300011334
• Scaffold ID: Ga0153697_1107
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 28603
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (87.80%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Daesunglee, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6746111
  • Long. (^o): 127.3841278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002322	Metagenome / Metatranscriptome	571	Y
F002542	Metagenome / Metatranscriptome	550	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_110715	F002542	AGGA	MHPSYLGWQVDWPVFIKMPLSADGKEWKRDEHFNWLERGIEADKVSILYKSGYLHHNTELEIQNKVGDRLSEMNGSQLKTLVNLINAEVKKRTSSTNEFENKRCKQSTLDDKQRGLIRRFLVGNKWIMDDFYKMRDTILGE*
Ga0153697_11077	F002322	GGAG	MPAKLPYSKLVEKHILECIKGGISIRQMIASMQHLQDAPKSLSTMYQTYGNFIEAERAKINGAVGKKVIDQALEGDFKSQELFLRSKGGWSVSSTNVEVEQDIDPDVDESAVDTLMALLGKTTEDKDEDV*