Scaffold Ga0153697_1085

Overview

Basic Information

• Taxon OID: 3300011334
• Scaffold ID: Ga0153697_1085
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 30857
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (14.58%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (25.00%)
• Associated Families: 12

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Daesunglee, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6746111
  • Long. (^o): 127.3841278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012871	Metagenome / Metatranscriptome	276	N
F019140	Metagenome / Metatranscriptome	231	N
F021113	Metagenome / Metatranscriptome	220	Y
F023350	Metagenome / Metatranscriptome	210	N
F028175	Metagenome / Metatranscriptome	192	Y
F036240	Metagenome / Metatranscriptome	170	N
F041764	Metagenome / Metatranscriptome	159	N
F041777	Metagenome	159	Y
F046371	Metagenome / Metatranscriptome	151	N
F049635	Metagenome / Metatranscriptome	146	N
F071242	Metagenome / Metatranscriptome	122	Y
F091602	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_108510	F012871	AGG	MYGIALPEAQLLQMLHEFIGKNFRWVTFEHFNLAFELNAANELSKKCEHFGALSVSFIGDVLTHYKPHRDKANLQIQREIAESKEEQSKQLKESEMAVNDDSWRRMLAEDLHNFKKGKYTVIEIRAVSLMRWLEESKQINADTFTEEEYRLCKANAKKNIYFEQQLVQSMVDRMSDRKRMLLKESIRFEGMRELYKLYLSKQ*
Ga0153697_108512	F091602	N/A	MKSELTFCPNCESKELAERVDEILRDQQLEDWDTAYEFVDDEGEIKVCFDCQDWDDADDDAKGEGWD*
Ga0153697_108514	F049635	N/A	MNKQMYSTPFGRLVKINFKTLTKFKAALRISDPTARLYVTHPERMRIKDFNNICLHTGLSREEVFSTFTPTKLINEEND*
Ga0153697_108520	F041777	N/A	MKKQLLYIALLFGAMLIAGTIDEQTRQLEQTPNHTTK*
Ga0153697_108523	F023350	N/A	VKLDHYIEGRYKHFKELAYNIARKEPFFEDLLHDSLLSMFGSKHIEKLIDTGDFEFYLIRVMYLSVNSPTSPFYKQTIAWNRNRRDFKDYAHEVDKTWLGARMTNEQLDILISRLSEFERLIFQEYILEDFTYRELSKQTGIPVTFLYKTIDSIKQKIRANVIRKTQ*
Ga0153697_108532	F046371	N/A	MSENKLNFLKSQISVFNPTWTKEQIEMEAIRIYNEANTIDDDEEGCLYCGS*
Ga0153697_108537	F036240	N/A	MPNEQSAPNFFAVVNDMAKRFVELMQSDYRLKRKVGRNYTNAVSSGTLVKSLAYRLKIKGKSIDISIYAKGKASQYFLTRENGRRAGATPPPVSAILDWMRLKPIKLRDKESGKFKKPTEALKRQVAFLIARKIGKEGIKGWHAFDYAMENIWDEYEAKVVEAYGKDFNAVLENQLKDI*
Ga0153697_108538	F028175	N/A	MAITIDDQPYQYTPIGQRLMIVCSSTNVTNAGFRFVFDFGAFQVNVQPNASNKGILDLAPIFREQLKHEAGAANEGINDEYKSVANISCTIKEGWLIDGVFTVSGSGMADIDDVYAFLAEYQVSDGYKPNPNTRYGTNSIGKYLLSERTTDTHKWSEAPARGLSNDWVYIPTRLADFGQLYSLNNNGLLVDNDATDLFVSTYDNSNTLIEATNYTLFTDLNGVSRLGAYPQNLIIDGADFTNVKYYTIQAGASIAPPIYTPSSRVYCFYLVADDCRFDNVRLGWTNTCGGVDYFNFTKKSELSYNYDRKQYQKVVGQYNTAAFSFNTWDRGTTDRYVNTTKGLQINSDWISVGEFELLQTLCRSNDVFIIGDDTTMTPVLVDTQNFVIKDERYSKLYNVTLNLKYSQPVGL*
Ga0153697_108540	F071242	N/A	MINNFQNKAHSMVACLEFIKLNIKTKGKSGIMANGKRKLEMWKHYAWKVTRISLNVAFWIFILYKLLS*
Ga0153697_108543	F041764	AGG	MNIEAGGFLKVELFNDDATLFLNALTKITNESGKMGFKSYGLSEDEMKTLNTILDSLG*
Ga0153697_10855	F021113	AGG	MKRNILAALLLFIGTSLLWLVLCWNLWGKKDAKDTYSIVQKQDSIINYNAGEYDRLLQEQIELYKQLRTYEDAQLTAKTTYQRTRSAIIIRDTVNIVDVIRLVNSCDSVIASDSLVINNLKEQINIEEQKIDNLQEVVEAYEQKEDVLTEEINNLAADKKKLEKQKKRRNHALVVTSTVAILSTFVLSILL*
Ga0153697_10856	F019140	N/A	MKQTPLYESLKMTHDREREIVNSIATYFQQGKILGDILLELSQRKDMNAKEKIYLALMIGSMMSKQTIDGAEQN*