Scaffold Ga0153697_1081

Overview

Basic Information

• Taxon OID: 3300011334
• Scaffold ID: Ga0153697_1081
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 31718
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 40 (81.63%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Daesunglee, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6746111
  • Long. (^o): 127.3841278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002269	Metagenome / Metatranscriptome	576	Y
F007029	Metagenome / Metatranscriptome	359	Y
F015095	Metagenome / Metatranscriptome	257	Y
F023592	Metagenome / Metatranscriptome	209	Y
F027413	Metagenome / Metatranscriptome	194	N
F029049	Metagenome / Metatranscriptome	189	Y
F030434	Metagenome	185	N
F030767	Metagenome / Metatranscriptome	184	Y
F090388	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_108111	F027413	N/A	MSSWLPEWRIIVGTTVYDNVLSVTMDTGRADIDLQCNAGYARMDIVNVNNTAFDIDVTDSLTLELKNSAGVYVPVFGGEVSDFGISVRSPEEFGFITIGNILAVGSLAKLTKALFPDALAKTYDGTQIYDILNELLINSWFEVAPALQWSAYDPTTTWANAENVGLGEIDTPGLYEMISRSADPFSSYNLCAQIAQSALGQLYEDKEGRVCYADADHRTAYLSANGYTTLSANYATPISVKSILQIGKIRNSLVYNYGNNYANQATATDATSIANYGRYQRSVSSNLHNLSDVNDVMDRELGLRAIPREQLQSITFRLDNAELPDVERDKLIDVFFGQPVVLNDLPINMFNGSFNGFVEGFAIRATPQFVDLTLTLSPTDFSLVAPQWDTVSPANLIWTGVNATLIWQNAYGGLT*
Ga0153697_108115	F002269	AGGAG	MKEQAIAAAKSYARASLASVAALYMSGITDPKVLANAFIAGLIGPLLKALQPSEKQLGLGAK*
Ga0153697_108116	F015095	AGG	MERAQLVVGIALGSFTILGLGAGLIRHFVKFYLAELKPDGNGGHNLAGRVERIEKRVDKIYEILLEDRLAK*
Ga0153697_108117	F023592	AGG	MNSLDMLIGLFAVGMGFMFMVIGYSIGYRQGHGEGFIRGRAIAQALREKELI*
Ga0153697_108118	F007029	AGGAG	MGFLDNYEDVNARIKRFRSEFPSGRLVAYIEDIDIIAGTILVKAEAYREYEDTVPSAVDYAFGNVSTYPNNMKKWFIEDTITSAYGRCIGLLTPSLEHNSRPTVQDMEKVENLPADSDPWSTKASIEDMATMASGILEIGKNLGGEIVAESPRCPHGTMIWAEGTAKSTGKPWAAYKCTERIRANQCNPVWQVLGSDGKWKPQV*
Ga0153697_108120	F029049	N/A	MSRVAKVVLDRSQEITAHRVGLERTITRNAEVQDASNFGQKYVNWHELVWQESEAAAAEIAVANYFGDYGFIPSIDNGHDTADVGENIEVKWTKHTNGHLILQNRGPGRPNDVAVLVTGFSPVYVLLGWMPVHMAKQPRYKHPHQNNYWVPRSSLFEMQYLKRSNYGDV*
Ga0153697_108121	F030767	GAGG	MATYKTKCRLCARITEHIERVVTDNLPPYVKTLQCVKCGVMGIVLMEDVKDADV*
Ga0153697_108145	F030434	N/A	MAITEMAQIVQVILDRSQELQAAASGFARSTGEKANTPDHAGRYNTKINFHEFVAEHSEAAGAEIAVAQYMGIRNFTPTVNTFHDEADITLGNLGFEVKWTKYINGHLIIHKDYPRLTDVAILVVNKSPVYQIIGWMPVVWAKKAKYYNPADGNFWISQRELFEMDTLRKSVYGITED*
Ga0153697_108146	F090388	AGGA	MALLRINCRVCAKIGSGMQTHKIVDEFIDLPPNVVCVQCLGCGVMGIEMLLDTERMPDTDA*