Scaffold Ga0153697

Basic Information
Taxon OID	3300011334 Open in IMG/M
Scaffold ID	Ga0153697_1077 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011334 Open in IMG/M

Scaffold ID

Ga0153697_1077 Open in IMG/M

Source Dataset Name

Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	32159
Total Scaffold Genes	45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	33 (73.33%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

32159

Total Scaffold Genes

45 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

33 (73.33%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Daesunglee, Gyeonggi-do, South Korea
Coordinates	Lat. (^o)	37.6746111	Long. (^o)	127.3841278	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Daesunglee, Gyeonggi-do, South Korea

Coordinates

Lat. (^o)

37.6746111

Long. (^o)

127.3841278

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027776	Metagenome	193	Y
F044360	Metagenome	154	Y
F051705	Metagenome	143	N
F052463	Metagenome	142	N
F056414	Metagenome	137	Y
F079788	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_107711	F051705	GAGG	MKITATFNDEEEAIKAIHSGYAWQTLHEINEVLRQNRKYDLPFEQTVSQIQASVNDALAMIYPD*
Ga0153697_107713	F079788	GGAG	MDTDDEIESWATIALGLIASVFFFIGLMAVVAAVCMAWGYYTYQPLCGTVAALFTQECNRT*
Ga0153697_107714	F027776	AGGAG	MMNPLKIEIKKTVFAHLPAVGDFGILSRDDLATVLHTACTEAALAGWARGAEAVQKRMDQECEILRQELKSIQIELDYAKAN*
Ga0153697_107716	F056414	GAGG	MKLTEYQRSQLKAAAKFGGSQIDKVAASLQRENPAAFWLDSELSQRDFYHQPMAPHRSYVERFIPRRREQDNERDQIMAQNHYLAYTHQIGAAA*
Ga0153697_107723	F044360	N/A	LKEMSMASKKLTERDVFPSDPFKVFQHSLMVEMELAKLEHEKTWGIDRVIDLVEPEFRRKFNAQRERIWEASQARDEERLEKATKGMIAAYRALTRWATEAGIEQMPKIDCMEHQMADGSLMVVVKDKQVATWYEQFRKAPGARSIWTLAELEVVMNGPTLKQVRDIKAAIPSATMVPVTPQGSSGFEEMENDIDISKPFKGGKMFDTKAAERAKNERRT*
Ga0153697_107724	F052463	GGAGG	MPGNPKVHRDVALLNELDEEMIFLMFEEGKSISEICIGMGVSKRALDRWIDENDHGAKITRARTLAADKFACELVTIADSVADANQMKPGYQIKTRQWLAERWDRKTYGTDKAQAVNISIQGLRMEALRHVEVVEQLSTDQMPKLSTE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0153697_1077

Overview

Ecosystem & Geography

Associated Families

Sequences