Scaffold Ga0153697_1076

Overview

Basic Information

• Taxon OID: 3300011334
• Scaffold ID: Ga0153697_1076
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 32385
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 46 (75.41%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Daesunglee, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6746111
  • Long. (^o): 127.3841278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016520	Metagenome	246	Y
F023542	Metagenome	209	Y
F051789	Metagenome	143	Y
F079811	Metagenome / Metatranscriptome	115	Y
F085366	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_107610	F079811	GGTGG	MNASPSKYFAFPPYRAESLGGDRGWWGVMNRNGLNVLTFFDKPGAVVTTEARAKKIADEWNKTEETS*
Ga0153697_107617	F051789	AGGA	MKIKTTIHIHFQKYTWEDKGEFQIFSFKLEDSDYRTYVGPQEIEIEVPNDYDPRAQQIAALEKQLTNVMADYQKSVNEINDRISKLTALEYTA*
Ga0153697_107618	F023542	N/A	MDILEIAIKASGGTGRLAYLLEVKQNVVSNWRVRGVPKGWEQVLRFKFKKQIAAAAK*
Ga0153697_107627	F085366	AGGA	MMDKNEPKGYGYGNSAKMAGNPAPEMKSNGSVKNRIPNAMTNNVGKDNKCEGGKSSGVCYTHDRKSYQ*
Ga0153697_10769	F016520	GAGG	MTPECPEGLIKFACEIEGVDLVCFLEYSPADYGSKDSLGLAYEPDQDESMDLVNAYITGTDVDIAHLLMQSLVDHITATAMEVSK*