Scaffold Ga0153697_1065

Overview

Basic Information

• Taxon OID: 3300011334
• Scaffold ID: Ga0153697_1065
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 33869
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (84.31%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Daesunglee, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6746111
  • Long. (^o): 127.3841278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008183	Metagenome / Metatranscriptome	337	Y
F045714	Metagenome	152	Y
F058801	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_106524	F058801	AGGAG	VKHSNFETPRNFADCTWVQGYGREEPLWERVAGYVLAFAIGAGLAVLLVAWWSS*
Ga0153697_106529	F008183	AGG	MLETDVMAVEGNEIDLVKYGVLWQKVQDMDKKMDKVERQLEELVALANKGRGGLWFGMTVVSGASAVVGYFLSYWKH*
Ga0153697_106548	F045714	AGG	MQDIILMPRYRKNKKPVKVRKPSKPIDGINHRLLREQAEAAAQATEAQEIVPEDDALPTREELETKATELGIRFDGRTKDKKLGQLIQDRLSENTGE*