Scaffold Ga0153697_1062

Overview

Basic Information

• Taxon OID: 3300011334
• Scaffold ID: Ga0153697_1062
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 34531
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (18.37%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Daesunglee, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6746111
  • Long. (^o): 127.3841278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009003	Metagenome / Metatranscriptome	324	Y
F011136	Metagenome / Metatranscriptome	294	Y
F026004	Metagenome	199	Y
F036096	Metagenome	170	Y
F037731	Metagenome	167	N
F042339	Metagenome	158	Y
F069698	Metagenome	123	N
F079655	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_106213	F037731	GAG	MPTKKQTSAQPNKVDFKGLRYKLQLFDGFWSIPLAFLLFAVSGTVSVAYFGDALISTEYIQYIVLAAMVMVFANFVVFLGIRFNFRALQREIYNKEVKYEINTYLTTWQKVVLYLLLYAFYFAAYLYILHMLMTVTA*
Ga0153697_106215	F026004	N/A	MGKKTKLGIGLGITILALAVIFSVRTCNRPVTNPAVKRLQDVNDSLYQIIQVNNSKTDSLFAKIDSLQVHQDTIIQQQQITNEIYRNETYNILSASPSATNNQFRTTLKKSDSLLKAGFYTRTYNLRSATFQSQLQ*
Ga0153697_106216	F042339	N/A	MLYWYNTAQEIDSLYQMERLKVTYYAKITGIQAASYETLAEIYKNKQSIDKAVATEKDNEIAELKKRNRRLIISNTAITLGVTALAFSTIYFAIL*
Ga0153697_106217	F069698	N/A	MDIQPRDIITIIGGAVSLTGLYYALKRDVVKVSSALGKVESYHKREVTMLSESIKETKDEFNTKLNVMKDEQNKAIDKLEKKIDVIAAQNLTISTNLAELAGFIRGTK*
Ga0153697_106220	F036096	AGCAG	MKATLTFDLTDDQHSFDCAINGKKYYDILDEVRQHLRSLEKYQDLTEEQYEIIGKVRQWLHEQLLDAGIADNF*
Ga0153697_106221	F079655	N/A	MAMSEDKKETAMRTLSKSLRRRFQGPTVNISWVELDAFMMKAQTRELTNLVNSYNEGYTDCKAGLPNKAENESNTNV*
Ga0153697_106223	F009003	N/A	MKAKEKAWQLYSNYFDIIENGKQEGELVEAHIKAVNAALFCVDEALLNAPTDIVNDFEGTGEYYSVKAYYMHVKNEILKLNATKGN*
Ga0153697_106240	F011136	N/A	LDSCISVNISKHYNAWLDKATRLAHDKNKGSDLLHEVLARLMDRPEQDIKDIVCRGKVEAYINRAIWLSWHSARSDYAMKYRKYYELHIDKQVEDTKQDETWIGAFIDGEYLYSAIGRMNEFDAILLRLYSKPDFDYKELSKETGIPYAYLRTSIHRALKRIREYVKLQRAIAHSEREAGDLQKM*