Scaffold Ga0153697_1056

Overview

Basic Information

• Taxon OID: 3300011334
• Scaffold ID: Ga0153697_1056
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 35276
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (64.81%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Daesunglee, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6746111
  • Long. (^o): 127.3841278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000934	Metagenome / Metatranscriptome	828	Y
F011148	Metagenome / Metatranscriptome	294	Y
F012668	Metagenome / Metatranscriptome	278	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_105617	F000934	AGCAGG	MSLNQILAISESVGIKDHRFIGQVISRNQRMNTSEQMTVVPFEFKMKPMNYLYYSQNRDLLATLRYYDRALTQYINFGATGWVNYIAYQGDMAIGSIGSCQWQTSSANTTLVLGSLPSISSTAYVVRAGDFCQVGLYTYIATQDVQRGGGSTVNIPVHRNLLTPVVSPINAVIGQYGTTVSMGGSSYTGVTFPVVLTDYPTYTLMPIANDSFVQWAGEFTAMEIVV*
Ga0153697_105624	F011148	N/A	MAVFNKNTLTQVSGFDNPIIAGELVYEQSTFWNLALTAEDNITPVDLTGATIDAQIVRRTLSNVQDTRYGLSFDIGNFTPTPTPISLTITNRNNAEGSFTLVIDDSSWGLVDSDTQMDIASANGAGFSGRIKISFPSSGSQPAEDNIIFLLFLVRSDGIVKV*
Ga0153697_10569	F012668	N/A	MTIKRYENVVVKTVTNGVDSLGEYTTTITTWFETRALVSDVANSLRISERYRVYSDLTNFTMNYTPNTKTIVDNQDNYSFFWRGKDWRITDCRETNDRQFVTFLCYRNDPSTPV*