Scaffold Ga0153697_1051

Overview

Basic Information

• Taxon OID: 3300011334
• Scaffold ID: Ga0153697_1051
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 35808
• Total Scaffold Genes: 57
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (10.53%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Daesunglee, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6746111
  • Long. (^o): 127.3841278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011227	Metagenome / Metatranscriptome	293	Y
F034850	Metagenome	173	Y
F041184	Metagenome / Metatranscriptome	160	N
F047481	Metagenome / Metatranscriptome	149	Y
F051129	Metagenome	144	N
F052371	Metagenome	142	Y
F093533	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_105112	F047481	GAG	MDSKSIGTCVATILIKLWADIALSEVGVVVAILAGISTIVYNVYRLVKEIKS*
Ga0153697_105113	F011227	N/A	MSIIELKAKAYDLLATLEYTQKQLQEVNQKIAEELQKEKNENG*
Ga0153697_105116	F041184	N/A	MASDFRPGKLDIQMWRNDTWQQVFTLLADTTPINLSGATVYIQVRKGCGGVLALSLTNGSGVTIGGVSNNQITVNKLVDIAKGNYVWDMQVTFTTGVVKTYLEGDFIVYDDVTKP*
Ga0153697_10512	F093533	N/A	MYYERIEMTLEVRGEVRATAFPLRNHESIERQRHQWYYFYGLKSIKDWEIYITQKSFMQNISPFRIEKPFPYLIKSQQNESKSESTNEHCESINPSGGLEQTVGRGQSKVL*
Ga0153697_105138	F051129	N/A	MTKEDEQFIEENIYNFECVKAGFMKNLPLHILVGYEQIYRRYLDSGFILTSWCGSCVADMMKRLSRYWDEYQASKPIEVEQLIQEAPKKKGRPFKKQQ*
Ga0153697_105146	F052371	N/A	LTSSEELDLERFKLSRTSEPIKNLSTALVLDELANGMQKLGVKGDKMPSTADILLMYKSVMEEYPNIKIGEISLAFDLAAKGKLYIEAETYQNFSMLYLHRLLRAFARYGMQKLNEIKPVTESKWQPRFISDDEKIETAFDCFKKFRQWDNIVFGVDVFNILHKRGSIIVTPSETYEKVIEAMTKKMFEGSRQDKIDIKNKMKDDDYMENQCRRMAVSIYFTKILNQG*
Ga0153697_105154	F093533	N/A	MYYDRIEMTLEVRGEVRATAFPLRNHESIERQRHQWYYFYGLKSIKDWEIYITQKSMMQNSSPYRIEKPFPFLIKSQQNESTESESTNEHCEPTDTSGGLEQTVGKRQSQVL*
Ga0153697_10516	F034850	N/A	MEDDLVLGESDEVEYVEEELGYGYPQYISSSVEVLTMLETANPMTKEEVQRVEELKKLCFEMLEFSVKSMHSMLFINDIAD*