Scaffold Ga0153697

Basic Information
Taxon OID	3300011334 Open in IMG/M
Scaffold ID	Ga0153697_1047 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011334 Open in IMG/M

Scaffold ID

Ga0153697_1047 Open in IMG/M

Source Dataset Name

Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	36398
Total Scaffold Genes	39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	35 (89.74%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

36398

Total Scaffold Genes

39 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

35 (89.74%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Daesunglee, Gyeonggi-do, South Korea
Coordinates	Lat. (^o)	37.6746111	Long. (^o)	127.3841278	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Daesunglee, Gyeonggi-do, South Korea

Coordinates

Lat. (^o)

37.6746111

Long. (^o)

127.3841278

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001299	Metagenome / Metatranscriptome	727	Y
F012328	Metagenome / Metatranscriptome	281	Y
F026827	Metagenome / Metatranscriptome	196	Y
F049577	Metagenome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_104711	F049577	GGA	MSNEVRDGMIHQAQQERMSRDTLIMQKVNAAHREGFKTRFPGQVEHCMRLTAERLQAILTRKPTDLADPETWTSTADEIAKLSEALWHLSVISQIYPMEITNDEHSK*
Ga0153697_104712	F012328	GGGGG	MYRIEKENEMTTTTPPENPWDDTKAAPTEPAKETKTKKSKIDWVVKPAAPVATNAGDFDMDGLMTDFPTAKELERFVFDETGIVLNLKGRANKLKYQVAMDVLNGQEVEAKFVGGDNPYIDKTELIPVEDLKPVPAKDKSLPDHSEMQNIFVSNSIPHPDFESRMQDKKVSVYFRKYKTGQISYEIVGPVDQRPHGVKLDKYGRERPEIIKWVDPRTGEQVIVREDGTMTPQGRKLRAMMQKFRVNNSNHWDTWIDREFASLSDAVVSNPWDLE*
Ga0153697_104714	F026827	AGGA	MSTNPQSKPINQKRGPTTGNLGTTSKRDAFLSEKSASSSEKATLAKMVTDALEMRGRGTAAKVNPALEGISGNTNTGPKKNATADGSRLPSKYKK*
Ga0153697_10473	F001299	N/A	MSDYNQPEYLDDSDPEKNWDYYRNDHGGMITNHNGMADKLLQNDDLYRSMKGDWKRTSNNKSGNIIITTGREDGKFYIRREQTNIEAIKKAVKNHRHAAELGIPDPLAPIGDDGKLSHKWMDLPTVIAVRISDEYFGGMPWHTIKHDRTLKAQFYRVVETEYPEYVCYPGGKLPIPVAVPYPTKSGEKKYFQGR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0153697_1047

Overview

Ecosystem & Geography

Associated Families

Sequences