Scaffold Ga0153697_1040

Overview

Basic Information

• Taxon OID: 3300011334
• Scaffold ID: Ga0153697_1040
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 39767
• Total Scaffold Genes: 66
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 56 (84.85%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Daesunglee, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6746111
  • Long. (^o): 127.3841278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F001094	Metagenome / Metatranscriptome	780	Y
F001477	Metagenome / Metatranscriptome	687	Y
F003212	Metagenome / Metatranscriptome	500	Y
F003863	Metagenome	464	Y
F004430	Metagenome / Metatranscriptome	438	Y
F019314	Metagenome / Metatranscriptome	230	Y
F044438	Metagenome	154	Y
F064708	Metagenome	128	Y
F073256	Metagenome	120	Y
F075748	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_104014	F064708	AGGAGG	MQKKLGRFWFYGGRNSGIGLGFNVDKYHVTVDLLFWYAGFEFNGA*
Ga0153697_104016	F001094	AGGAG	MNAKTKAVLATYLRAGVAATLALYLAGETDPKKLGAAALAAVAGPVLKWLDPNAKEFGRGSK*
Ga0153697_104023	F004430	AGG	MVTGAEVLRMLIPTGGYIITGNDYEGIQFLECEPITKQQFEAGFAQVETWKAEQAAAKAHERSALLAKLGITEDEAKLLLS*
Ga0153697_104046	F019314	AGGAGG	MKKGTHEKASVQQPTEGKKDTSKPKGGKVEFGYAGTARKGKKA*
Ga0153697_104056	F073256	AGG	MQLQEIDTIQDLKEWVGEHLKGARVTEDSAGTIVIHTGLISTMGGYLYEQEGETE*
Ga0153697_104059	F075748	GAGG	MNKQEILTIIDSTQNFNAYIGSIDCLHGLALELVIDVAGVDGEEWTDEECLDTIKEIVDLSNAYKNTHSWGD*
Ga0153697_104060	F003212	N/A	MKDKWLVTLEIDTYDGDPRKWDWDYIFTGEDDVKAISSEFKGRVLPTNEGESNE*
Ga0153697_104061	F000821	GGAG	MNEEYLRAKFNLCINEAEKDLQAQDIARAIKNLERANSAMARLFGIEEDENE*
Ga0153697_104062	F001477	N/A	MVAGMGGMTMSKEFIALAHYPDSNIYTIHPKKSELILFYEVVTPNGENEWGGANCIEAIKWLSLSPTGSRLLISAWDSDEEDAHLVGQTIDVTDLIKAASL*
Ga0153697_104063	F003863	GGAGG	MESKQVSGKQAIHYRNYRRARDKALVRLAHLYPDTYKQLLDEQRSFDEQEGKTWVISTDSRLTVGIHTRANNTPAIADPADAGENEGNNGGEA*
Ga0153697_10407	F044438	GAG	MANTEMQYVKNRIQKLEKDFAAFASLLIQAGIVEVKEEDGVQVYAVNKVALDGK*