Scaffold Ga0153697_1030

Overview

Basic Information

• Taxon OID: 3300011334
• Scaffold ID: Ga0153697_1030
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 44658
• Total Scaffold Genes: 72
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 55 (76.39%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Daesunglee, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6746111
  • Long. (^o): 127.3841278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009735	Metagenome / Metatranscriptome	313	Y
F017814	Metagenome / Metatranscriptome	238	Y
F021243	Metagenome	219	Y
F059768	Metagenome / Metatranscriptome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_103024	F017814	AGGAG	MSQQSNFDFNQFNSLTERKPAGLQIYLAQQLLSNALWSFEKYDNPRQEEVRDALNSLKALRAQLKDDAAARATAAA*
Ga0153697_103042	F009735	N/A	MAMMTGIVESTSTKDVNTKFGTKPTYSMKVNGTWIKCGFKNPNVEAGYEIQFDGVTGTYGVETKSVEVLRKAVASPAPESTTVAVPTAVAVPKTSYGGYKDKVFPVPPLHGDRAIVRQNALARATDIYIAARGGKPFDLEASTLDLIIQFARKFEAYTAGDLDMAEAMKEDGGTGEVELQLS*
Ga0153697_103052	F059768	AGGAG	MTLQEHVLALPEAERVKFLRAMVAVVDAGRTAGVPPEQWAKEYADIYKNIKVKA*
Ga0153697_103053	F021243	AGG	MKDAEDEAFERLSMKQNQWKHTSGNRKRQIAHMDMHSHPAEFVHLHRNDTIEEVAVELETKFTMPFGRDTVQSFAAFVRGMKR*