Scaffold Ga0153697_1026

Overview

Basic Information

• Taxon OID: 3300011334
• Scaffold ID: Ga0153697_1026
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 45463
• Total Scaffold Genes: 63
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 47 (74.60%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Daesunglee, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6746111
  • Long. (^o): 127.3841278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012212	Metagenome / Metatranscriptome	282	Y
F017969	Metagenome	237	Y
F027776	Metagenome	193	Y
F039985	Metagenome / Metatranscriptome	162	N
F044360	Metagenome	154	Y
F052463	Metagenome	142	N
F079788	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_102613	F052463	GGAGG	MPGNPKVHRDVALLNELDEEMIFLMFEEGKSISEICIGMGVSKRALDRWIDENDYGAKITRARTLAADKFACELVTIADGVDDANQGKPGYQIKTRQWLAERWDRKTYGTDKAQSVNISIQGLRMEALRHVEVVEQLSTDQMPKLSTE*
Ga0153697_102614	F044360	N/A	MVEMELAKMEHEKTWGIDRVIDLVEPEFRRKFNAQRERIWEASQARDEERLEKAIKGMIAAYKALTRWATEAGIEQMPKIDCMEHRMADGSLMVIVRDKQMAIWYEQFRKDPGARSIWTLAELEVVMTGPTLKQVRDIKAAIPGATMVPVTPQGSSGFEEMENDIDISKPFQGGKLFDTKAAERAKNERRT*
Ga0153697_102616	F039985	AGGA	MLNLSNNSGSGNSYIRFAPQANAWTNRDGEEIQLKKVVMDLDSVQTGWLMIGAGVRDWQPDETLGAKSQSPGEGYKRGFVVTLYSKELGLVDWSANAYGPCKGFEKIYNEADKAAGDNGGKLPVIEYVNSTAEKVGKGNTRVPNFKLVSWVARPAGMNADAEDFVEPEPAPVRKAAKPAPAPVMDDEEFF*
Ga0153697_102625	F027776	N/A	MVVRMMNPLEIEIKRTVFAHLPAVGDFGIVDRGDLATMLHTACTEAALAGWARGAEFTQKRMDQECEILRQELKSIQIELDYAKAN*
Ga0153697_102626	F079788	GGAG	MDNDDEIESWASIALGLIASVFFFIGLMAVVAAACMAWGYYTYQPLCGTVAALFTQECKLT*
Ga0153697_102627	F017969	AGGAG	MIHILYIPVLFVCMNGNCEFAQSMRYFSRESDCRQAVEEHKETLRKMSLKGGQMVTLIEGTCITLKGGML*
Ga0153697_102642	F012212	AGG	VIDQVVSAESPWPNTETKTVLVCRIPKKDEDKMLRANEFMDKDGRICRWAVVNKK*