Scaffold Ga0153697_1022

Overview

Basic Information

• Taxon OID: 3300011334
• Scaffold ID: Ga0153697_1022
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 52608
• Total Scaffold Genes: 87
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 70 (80.46%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Daesunglee, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6746111
  • Long. (^o): 127.3841278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004432	Metagenome / Metatranscriptome	438	Y
F016519	Metagenome / Metatranscriptome	246	N
F041756	Metagenome	159	N
F051078	Metagenome / Metatranscriptome	144	N
F056333	Metagenome	137	N
F066529	Metagenome	126	Y
F085678	Metagenome	111	Y
F091938	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_102251	F056333	AGGAG	MTELNREEIEAVVAQELEFLLRWESSLPEPSQDVELIKAVMRVLQEFKVMKKDDK*
Ga0153697_102255	F041756	AGGAG	MKLHELEDLIMAAWITKEDIDSILWVLMDREKHPTEDELANLLIGLHSLHDARMTKLFNGYEQVLKTNKVIYKGYDILKNTPTL*
Ga0153697_102262	F051078	AGGA	MDSSTNLKPNDIALILRPTIVDGKYTNNFQVLVSGFGPLTISEDAVNNLIGMATILASVIPHMEEDEALANKLVEYCGKMFGDVGDFFYNADHDSFGDGNFTIDTKTIGGIQ*
Ga0153697_102267	F085678	AGGA	MNVEMIQEHEDGSATFTFDLTNEERDILLSLGIMTAIKNGIKEGKQYVGNTDLGYTQCGTPDSVHGEGEQP*
Ga0153697_102271	F091938	N/A	MIVVDFRQGIGLDIEYNDTICHIIDDGGTHDKLFSYSGILIKLPFISIYIGEFDEIGELIKGNKPTGE*
Ga0153697_102273	F016519	N/A	MATKRFDKELHDTYDKFGRDIVKSYVSSFWDMEARDNPDRYGIDLHLYKDNLLVGYAEVEVRLSWKTVEFPYEDLNVPNRKKKLLTQDMLTYFFSVNKDGTALFHCEAAAVLASEVKESRNKYVYQGELFYKVPLDRLSYVVLPTTSEATLS*
Ga0153697_102282	F004432	N/A	MVTKKTPVKTPAKVAPVKSRTPKPKTEQTINVSVAAPVPVAKTETKKDDSTLGKVIGLIEWVDNPFKLFTVILLSFLAFAGYFAWDSRQVILQAITNQDKMPQLVKQEELIVPARSLLKDVDGLVLLVHKANLSTNSRTTVLALNADGSREKTMEGTVTSLFNASADRNAAMVAMLNNEILCEEFNPSSKVGEWGAKQGVKFMCRGSIPPDLGKFAGYIAIGFKEKPEDIAALKTRINLAATDMSEE*
Ga0153697_102283	F066529	GGA	MIDKITLFPIVDATGYPQKTDGTQRRIEKHQEEYRAVLKAAKAEQKLDDLLFELYCKKAEQQEIRLEMFTNRKLDVYV*