Scaffold Ga0153697_1021

Overview

Basic Information

• Taxon OID: 3300011334
• Scaffold ID: Ga0153697_1021
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 54980
• Total Scaffold Genes: 76
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 56 (73.68%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Daesunglee, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6746111
  • Long. (^o): 127.3841278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000340	Metagenome / Metatranscriptome	1267	Y
F015965	Metagenome	250	Y
F020493	Metagenome	223	Y
F024254	Metagenome	206	Y
F024264	Metagenome / Metatranscriptome	206	Y
F030983	Metagenome	183	Y
F046202	Metagenome	151	Y
F048114	Metagenome	148	Y
F089863	Metagenome	108	Y
F102518	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_102111	F089863	GGA	MVEAYAAQQLSSNTPEEEWKQWASGLKAIDVFVNEGIPAPYIFENWQDWASALVGAVNQPTEETAT*
Ga0153697_102112	F024254	GAGG	MNFIEIFNYVAKVARPAHATATIAKAMEDEFADIGLDSLDGLVMLMYFDEIYGIADEVSKEWSPKSVQELHDLVMVNKTKEPASMEEVAEICK*
Ga0153697_102114	F015965	AGG	MLVDSKKKELGVEAILMIAAQETKSKYPASTVYATMVKEMNMTGTSLVRNGNTIFVIHNAEGRVGVFRALNADTARNYLESSYAFIQGAYKMGFDTLVSEFEDPTIMNIFKAISRNPPQEGMGYRAEKTNRGFRVTVKLGPKRAERE*
Ga0153697_102131	F048114	GGGGG	LTGLISGKRVWNEGEGDDEHRHRCLVRGIIKMRMKDRQEAHVWLYGGMGKDGKYFKGWNALHPESRLEADIREQWAKGNRGQDGEWK*
Ga0153697_102136	F046202	AGGAG	MFNTFGEFFWAFMAMSGFMFWICMVGFIAMVIKRNRAKRKAYYE*
Ga0153697_102138	F102518	AGAAGG	MKTFLILVVSVLVGCSSPKVVEGPIYTTQNLVMDRNIQPLTRGEQIDAIKDCQEVGLRPRLVYGKRLVNGYTAETVIDVICANRYAF*
Ga0153697_102140	F020493	N/A	MRKQMFWCIAMWITFCGFLIYLTELSRKEEVYKLNCELLMGGWHPDIPKEFAKFCEEAKRTMRSDR*
Ga0153697_10215	F000340	N/A	MNIQDVLKAVLPIVVACLAWLLGQVSDFSTRLTKIEGQMPALITKENVPTDSPLSADKRHAMKEEIYKDIHQLQVKVQLLEEREKYGKK*
Ga0153697_102154	F030983	N/A	LNTLTAKENTMTNEIETIIYTEDSVRVSVSEWDDGGAWLHLQGRNASMSTVLTREEAQQLLAGLQAILAKEVTA*
Ga0153697_102171	F024264	GGAG	MSTLTNVFSAHADATGTIYAGATNLAGYQALSGGTAGEIVFRDGGSGGTVLMKINIPANTNNPFANIIPGNGIRFTSSIHVTLPASAAITIFCG*