Scaffold Ga0153697_1019

Overview

Basic Information

• Taxon OID: 3300011334
• Scaffold ID: Ga0153697_1019
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 56239
• Total Scaffold Genes: 82
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 71 (86.59%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Daesunglee, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6746111
  • Long. (^o): 127.3841278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006419	Metagenome / Metatranscriptome	373	Y
F025975	Metagenome / Metatranscriptome	199	Y
F031360	Metagenome	182	Y
F072099	Metagenome	121	Y
F092060	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_10194	F006419	GGAG	MKYAIVKDGVVVNVIEYETQPSTPPAGFEDGHVAIQQNHVSVGWLYANGTFTDPNPPKQMQVDPPKSLTDMILANPTELAKLKQALGI*
Ga0153697_101957	F092060	AGGAG	MKFIASKGNVEIWAAFSQAAQVYELFFDKDGDSYTGWNVDSLKDAKAAANYIFAEQMAV*
Ga0153697_101959	F072099	GGAGG	MKKYRDIPLSVQLIDLEMPLVEVGGKRFDTLREDFYDNAVNIMNSARKFTPIFSPYDIALSGGEPYSVWR*
Ga0153697_101964	F025975	AGGAG	MQSYSNPESRNTMRAAGNPMKTGAAIGGGGNQTQGAGQIPGKVSVPMPGTDKTQSAYKGGTAKAPMGFNNGLIAGKI*
Ga0153697_10197	F031360	GGAG	MNEVKLSTNLVNAILQYLGSRPYTEVFQVIEAIQKEAKEQAEAPAAE*