Scaffold Ga0153697_1017

Overview

Basic Information

• Taxon OID: 3300011334
• Scaffold ID: Ga0153697_1017
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 57923
• Total Scaffold Genes: 94
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (6.38%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Daesunglee, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6746111
  • Long. (^o): 127.3841278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002047	Metagenome / Metatranscriptome	599	Y
F004866	Metagenome	420	Y
F025233	Metagenome / Metatranscriptome	202	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_101723	F004866	GAG	MAIVNKVDLKLQVDINETIKYQILTYCFFENILISNSDLKCLMELSKQPKIELTKFCIFLTEQEIFKSPQSARNALAKAEKKKLIVKNGINKKTISINKNINVQIDGLILLDYKILGREPQEA*
Ga0153697_101734	F025233	N/A	MYLFIVKIMFILQLHSGVIIPTNDVDGRIIYSIPTVGIEYAYKSEIIQYLETGVFTYDETLDDKVDLSIFKK*
Ga0153697_101761	F002047	N/A	MWELFQVMLKNNLTPNQVLLLFGIKQGVSLPQVTDNDKLALEKSGFLILDDNKYTMSAEAKSLIVHLDNYFIKAKKKTDAQLMGKDFADKINIYREVFPNIKLPSGKPARVNVKMLSESFRWLFETYDYTWEEVIKATKMYVNEYRDAQYMYMQTSQYFICKQDKHKVKSSTLADYCDMIKDGIETEYKHFKENVI*