Scaffold Ga0153697_1013

Overview

Basic Information

• Taxon OID: 3300011334
• Scaffold ID: Ga0153697_1013
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 60144
• Total Scaffold Genes: 96
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 73 (76.04%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Daesunglee, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6746111
  • Long. (^o): 127.3841278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000332	Metagenome / Metatranscriptome	1283	Y
F002933	Metagenome / Metatranscriptome	519	Y
F005234	Metagenome / Metatranscriptome	407	Y
F040071	Metagenome / Metatranscriptome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_101320	F005234	AGGA	MMQTDVLSKAAAAGATTTIFAGPARIKGLTISYPSGGTVVLNDGTGGTAKFSFTAPAAAGSINVLIPGEGIKCNTNISAVCAASTTAVVFYG*
Ga0153697_101371	F040071	GGAG	MSDNPKLFPAWKQAVKTLLDSGLTYGSVLKRSYISELCDVPKPVDIDDVRRYDLEVLRCITEIKDILLTAHCMLMVSDHAGNYIIIEPESQTQHAVDAGVKAIGREMKRMAMGVSFTKTELLTDEGRKKNADAQAKISKLAGMLSLEKRELQRIADRSQP*
Ga0153697_101394	F002933	N/A	MIPPIHKWYPMVVEADYPTKTDALERRQQRLEEEYKQALKMKKVKDKIDDLEFELYVKKAEQNQLRLEIFTNRKVDILV*
Ga0153697_101395	F000332	N/A	MRWLILLLLLGLVGAVAKNGCHVREFYGIGYTVHDPTQRHKEMMAWLDQNAQHCKASEYVVIWNNLAEWAGASDSTWLRNKVVHGYKDALAREAK*