Scaffold Ga0153697_1011

Overview

Basic Information

• Taxon OID: 3300011334
• Scaffold ID: Ga0153697_1011
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 60603
• Total Scaffold Genes: 85
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 70 (82.35%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Daesunglee, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6746111
  • Long. (^o): 127.3841278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000332	Metagenome / Metatranscriptome	1283	Y
F000346	Metagenome / Metatranscriptome	1253	Y
F001530	Metagenome / Metatranscriptome	676	Y
F002933	Metagenome / Metatranscriptome	519	Y
F008614	Metagenome / Metatranscriptome	330	Y
F012428	Metagenome	280	Y
F026508	Metagenome	197	Y
F080865	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_10115	F012428	GAG	MNAFSNVIRLFFNTINTVQQLNLASLNLDLRTLPTDADYNSLRYGDVYRDTQGGTLQSGTNVLRIKVPIDLVGVQGTGAVGSVGPVGGTITKNLTGVSGAGAVGTMTP*
Ga0153697_101150	F080865	N/A	MSNTKLSYTAQAVSMASDLIEAKKCEDKATSLREGVNKQIIGMHKDNVVIGRYSKDGTGCSIATAWVDKLVLGGLSKKTAQNYLSLLREAVKTGKPVKDWGGTKAGGRQAAAGAKGSAKGKKEFADKLATCFRDAEFEGFVNDLEASWDNDEIKSLLEGIKSYLEASGLKID*
Ga0153697_101161	F001530	N/A	MQITKEFLETEIRSLETESQKAQTFLVQAQATIQAYKMLINRLEAPEPETEQSS*
Ga0153697_101162	F008614	GGAG	MMQTDVKSVHVEATATAVAYRTRVRGYQFITGGTAGDITFRDGGSGGPILIEFNIATAPTNPMSFTIPGEGVLFSTDVHITLPANAKITVFYG*
Ga0153697_101167	F026508	N/A	MVESAKESQMSPAEKQAREEMADRKMNAATDAAYTKSLTTTEYAPEKKDPRDAVRGQKGYAKGGSVGSASKRADGCAIKGKTRGTMITMKGGGCAY*
Ga0153697_101172	F000346	AGGAG	MDKADLKQDKKMMAGAVHKHEKKLHPGQPMTKLAKGGKTNLQMKQLGRGLAKVANQKKSSFTYKKGA*
Ga0153697_101183	F000332	GGA	MRWLILLLLLGLVGAVAKNGCHVREFYGIAYTVHDPTLRHKEMMAWLDQNAGHCKSTEYVVIWNNLSEWAGAADSTWLRNKVVHGYKDALEREKK*
Ga0153697_101184	F002933	GAG	MIPPIHKWYPMLDVADYPTKTDALERRTERLEEEYKQALKMKKVKDKIDDLEFELYVKKAERNQLRLEIFTNRKLDIYV*