Scaffold Ga0153697

Basic Information
Taxon OID	3300011334 Open in IMG/M
Scaffold ID	Ga0153697_1010 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011334 Open in IMG/M

Scaffold ID

Ga0153697_1010 Open in IMG/M

Source Dataset Name

Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	61526
Total Scaffold Genes	88 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	79 (89.77%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

61526

Total Scaffold Genes

88 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

79 (89.77%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Daesunglee, Gyeonggi-do, South Korea
Coordinates	Lat. (^o)	37.6746111	Long. (^o)	127.3841278	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Daesunglee, Gyeonggi-do, South Korea

Coordinates

Lat. (^o)

37.6746111

Long. (^o)

127.3841278

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002766	Metagenome / Metatranscriptome	531	Y
F007521	Metagenome / Metatranscriptome	349	Y
F017819	Metagenome / Metatranscriptome	238	Y
F027494	Metagenome	194	Y
F033010	Metagenome / Metatranscriptome	178	Y
F038210	Metagenome / Metatranscriptome	166	N
F065707	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_101018	F027494	GAG	MKYKTEMTFPVELTFDVLPPMEVDGVELPAQLDITKILLTITGPSGKPRQVDITKSFSEEQIMLFEDEIIENYNDENPAIRA*
Ga0153697_101021	F017819	GGAG	MRPVKDLPGVYIDVQLKNRAALEQIRKGQAVKEDIDMLIGAFNITEALAIMGKGSDWLEEIRQGQDALLELSRRGVANGMRFIMTAKQWEALKLVMDLHEEQLANATVYDIEKAHDYVLAIIRQGKARAIVKVQKEST*
Ga0153697_101042	F065707	AGGA	MRPAEFSTENPPRPIDCLETKEYIAGLRRRIEVQQDGMEHLANQVFALKKENEHLRSEVDKLSLDLGIKQEEVPPAWQEVKP*
Ga0153697_101045	F038210	N/A	VDLLHNVAMKIEKNIPLPGGVDPRERYPFPEMAVGDSFMILDATWIKNLRSAAYMYSRRHPGTRFTCRRHGEGWRLWRVS*
Ga0153697_101047	F033010	GAG	VNLGIPDCLVAFPHGLFVMIELKVVKRGRKVNLSPHQVAFHIKHADLRCPTYILVQYQPAGTTHASKSELLLFCGEQAIDLVNLGVDTPALARWLWTGVSWSDMRKHLVEC*
Ga0153697_101061	F002766	N/A	METTMLEFAEAVLKEIRKLQDQSKQIVLNGTITDMERYRFMMGRLEGLRMVEDSVKELLKKVTDDADDFLK*
Ga0153697_101072	F007521	AGGAG	MAGKGMGCATRGGGAVESGPKNKIMGAPSKTTGPVMMKKGGAANKGGMNEHKRMAMGKPIGKMGGGMMAKGYKKGGMC*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0153697_1010

Overview

Ecosystem & Geography

Associated Families

Sequences