Scaffold Ga0153697

Basic Information
Taxon OID	3300011334 Open in IMG/M
Scaffold ID	Ga0153697_1009 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011334 Open in IMG/M

Scaffold ID

Ga0153697_1009 Open in IMG/M

Source Dataset Name

Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	62717
Total Scaffold Genes	88 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	70 (79.55%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

62717

Total Scaffold Genes

88 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

70 (79.55%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Daesunglee, Gyeonggi-do, South Korea
Coordinates	Lat. (^o)	37.6746111	Long. (^o)	127.3841278	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Daesunglee, Gyeonggi-do, South Korea

Coordinates

Lat. (^o)

37.6746111

Long. (^o)

127.3841278

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000340	Metagenome / Metatranscriptome	1267	Y
F008614	Metagenome / Metatranscriptome	330	Y
F048853	Metagenome	147	Y
F060619	Metagenome	132	Y
F069662	Metagenome	123	Y
F082229	Metagenome	113	Y
F096920	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_100926	F000340	N/A	MNIQDILKAVLPIVVACLAWLLGQVSDFSTRLTKIEGQMPALITKENVPTDSPLSAEKRHAMKEEIYRDIHQLQVKVQLLEEREKGKTNVRN*
Ga0153697_100937	F060619	AGGAG	MGYRKSADGVAKKGKTEGTNLGNSGPTSKTQNGPIKNGVGKTNANMKSMGRNLAKLAAQRGR*
Ga0153697_100941	F096920	GGAG	MANIRKPTYKEVEKLDRSRELMQSGIEGEKDFLSKISTTMAKSARDEIRTGKKMRESVPEPVREYEAYQGAGYKKGGSVGSASKRADGCAIRGKTKGTIVMCGGGMYKK*
Ga0153697_100948	F008614	AGGAG	MGMQTDVQAAHVEATGTMVSYGTRVKGYQFLTGGTAGDIILRDGGATGIVRLQFNISATPTNPLSFLIPGEGILFRTDVHVTLPTGAKITVFYG*
Ga0153697_100955	F082229	GGA	MRALEILVQQIDEKIAQLKEAVTTGNFELFEEYKRTCGEIRGLLVARGYALDLKDRLEKADDE*
Ga0153697_100973	F048853	N/A	MGGDMTDKQTITSWRFSITWSDGETEGLASCLPDHIYDELLIYFKELEDLREEHDAEMRDEPYNFEDNTEKEIV*
Ga0153697_10098	F069662	AGGA	MVPKKLVPYSVYISVEQYKKLKVAAKNRQASSLIRNAIDMIIDGNDAFTSGYNQACKDASKIIYDCEEAQMIAVKGKDLGALLSEKIQTLRK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0153697_1009

Overview

Ecosystem & Geography

Associated Families

Sequences