Scaffold Ga0153697

Basic Information
Taxon OID	3300011334 Open in IMG/M
Scaffold ID	Ga0153697_1002 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011334 Open in IMG/M

Scaffold ID

Ga0153697_1002 Open in IMG/M

Source Dataset Name

Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	96990
Total Scaffold Genes	85 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (9.41%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

96990

Total Scaffold Genes

85 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (9.41%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Daesunglee, Gyeonggi-do, South Korea
Coordinates	Lat. (^o)	37.6746111	Long. (^o)	127.3841278	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Daesunglee, Gyeonggi-do, South Korea

Coordinates

Lat. (^o)

37.6746111

Long. (^o)

127.3841278

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003038	Metagenome / Metatranscriptome	511	Y
F012010	Metagenome / Metatranscriptome	284	Y
F038081	Metagenome	166	N
F060624	Metagenome / Metatranscriptome	132	N
F076870	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_100258	F038081	N/A	MTFNKEEIKNILNMLLSEDTENAVIAFSCIDNYASKKHLGELLVLYQFGRTAAEEWKKECKKGFKLIKNVLKLDSTDYRLPSSTVFSALMDNKCSEESIELYLELFTNQLSNNLYNMGYPTDKLEINVKIKDNE*
Ga0153697_100266	F003038	N/A	MGLSTTDLGTGTGQPKTISPGNHVLKINSLMLEDFQFIDDAKHLVLNVETEPISGFEGFWVDKDNESKGRHNGQIGRVKASQYAFADGETKSGIKIQRDRSIMIFMQNLCKALDINDWFIAQDGLHQTIDDLIIAFNKTADFKDNYLEFCVAGKEYIGKTGYTNYDMYLPKSEKGNYAYGEVDGGKVMRYSEAIHLRKTEVKDVKAFGDDDSFSIPSKSSSDFSLD*
Ga0153697_100273	F012010	N/A	MTEIFNKFVQEGITPDGYYVLHCIKEKIVPNNFVNNSLQVTKLKRYDWLNEDLTLTNKSLIFMAEINSFFKKTKAKTLQDLLGTKFIDRIQEYIELFPNRKLSSGKYARTTSKNLETSFKWFFENYSYDWETIIKATEKYVDDYSIRNYEFMRTSQYFIRKQNIDKSFESDLATYCELLNNGFDEPETYFKERIV*
Ga0153697_100278	F060624	AGAAGG	MFLPITLKDKEGSYIEHLNVTHITRTAFINVMNPDAGTKIYLRTGEVLATMVPMDILQQEIDECWKSASAMIIFNIIAEKTRVLSASEEPDLIDDDIEKSSSTQ*
Ga0153697_100281	F076870	AGAAG	MEKTATNDIVLTKKFKKFLHSIIEEHYNMTSDVTGSGHTLNYLWYMYYKGVKAGTYRPFIFMAEMHLLKEMGYMENDDIKNLNEMTKSEDKDNFYLGYLSLESLRNKRIKEHGVFSEGNKAYMNIIPDYASKVLNTTLFQNALKN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0153697_1002

Overview

Ecosystem & Geography

Associated Families

Sequences