Scaffold Ga0127502_10009003

Overview

Basic Information

• Taxon OID: 3300011333
• Scaffold ID: Ga0127502_10009003
• Source Dataset Name: Cornfield soil microbial communities from Stanford, California, USA - CI-CA-CRN metaT (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 750
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Sphaeropleales → Selenastraceae → Monoraphidium → Monoraphidium neglectum (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil → Soil Microbial Communities From Various Locations In Usa And Cambodia To Study Soil Gas Exchange Rates

Source Dataset Sampling Location

• Location Name: USA: Stanford, CA
• Coordinates
  • Lat. (^o): 37.4289
  • Long. (^o): -122.18
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000818	Metagenome / Metatranscriptome	878	Y
F004649	Metagenome / Metatranscriptome	429	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0127502_100090031	F004649	AGGAG	MQSQKKDSQPKTRFNIQPLEERIAPSNANFPPGQFPSGNPAQAPGQSNPNEVPATNPSNG
Ga0127502_100090032	F000818	AGGAG	MQEQKKDTQPKSRFSIQPLEERIAPAITGVQINGGGNTPNGNANGVPETFLNPAGHAPPGQNA*