NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126317_11053219

Scaffold Ga0126317_11053219


Overview

Basic Information
Taxon OID3300011332 Open in IMG/M
Scaffold IDGa0126317_11053219 Open in IMG/M
Source Dataset NameSoil microbial communities from California, USA to study soil gas exchange rates - SR-CA-SC2 metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)803
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil → Soil Microbial Communities From Various Locations In Usa And Cambodia To Study Soil Gas Exchange Rates

Source Dataset Sampling Location
Location NameStunt Ranch Reserve, CA
CoordinatesLat. (o)34.0938Long. (o)-118.6572Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F069733Metatranscriptome123N

Sequences

Protein IDFamilyRBSSequence
Ga0126317_110532191F069733N/AMAGRSSFCNCSFPSGLYIPSLHRFSSQSCNWFENRRFLSCPCEQFGKPDLKGVGFLQISTQAFLRSLEFSTRFTLYLLINRLISLPCGFVIKQKIAECRSFVRRIKISLRISLSRAAFANLYELASIYLGHPCEQPAQSKLFTKINLNYLASTYLNYPCEQLAQLRLFTSICLAAKIHSLLRGLASAWIFAPCETLKPLCLKRTFSTSWDRTVSDIAIVDLSCTGIPINTG*
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