Scaffold Ga0126317_11050199

Overview

Basic Information

• Taxon OID: 3300011332
• Scaffold ID: Ga0126317_11050199
• Source Dataset Name: Soil microbial communities from California, USA to study soil gas exchange rates - SR-CA-SC2 metaT (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2088
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil → Soil Microbial Communities From Various Locations In Usa And Cambodia To Study Soil Gas Exchange Rates

Source Dataset Sampling Location

• Location Name: Stunt Ranch Reserve, CA
• Coordinates
  • Lat. (^o): 34.0938
  • Long. (^o): -118.6572
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011803	Metagenome / Metatranscriptome	287	Y
F042033	Metagenome / Metatranscriptome	159	Y
F044745	Metagenome / Metatranscriptome	154	Y
F061313	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126317_110501993	F042033	AGGAG	MNDQNRVLVRRGAHELSAEEMERVGGGLPTDTVCTVPTNSCPNKDGDASIGECGPIC*
Ga0126317_110501994	F044745	AGGAG	MNDQNRVLVRKGARDLNDQEVAMVAGGLRTLTACTLAAAGTLDGDTFHSECGSPDQ*
Ga0126317_110501995	F011803	AGGAG	MNNQNRVLIRRGARELTPTESALVNGGFVTLSLCTNSPSPDGDQHVGEVGC*
Ga0126317_110501996	F061313	N/A	MMKGEKIMNDQNRVLARRGARDLNEKEIDQVCGGLRTATKCSLTAAGSLDGDLHECS*