Scaffold Ga0126317_10049441

Overview

Basic Information

• Taxon OID: 3300011332
• Scaffold ID: Ga0126317_10049441
• Source Dataset Name: Soil microbial communities from California, USA to study soil gas exchange rates - SR-CA-SC2 metaT (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2364
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil → Soil Microbial Communities From Various Locations In Usa And Cambodia To Study Soil Gas Exchange Rates

Source Dataset Sampling Location

• Location Name: Stunt Ranch Reserve, CA
• Coordinates
  • Lat. (^o): 34.0938
  • Long. (^o): -118.6572
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011803	Metagenome / Metatranscriptome	287	Y
F023966	Metagenome / Metatranscriptome	208	Y
F044745	Metagenome / Metatranscriptome	154	Y
F081702	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126317_100494412	F023966	N/A	MIKEEAMDQNNRVLNRMGARELTEQEVEAVNGALKVNHTLTPCFIDKQKQLLNGDQSIGECG*
Ga0126317_100494414	F044745	AGGAG	MNDQNRVLLRKGARDLNEQEVAMVAGGLQTLTACTLAAAGTLDGDTFHSECGSPDQ*
Ga0126317_100494415	F011803	GGA	MTKGENMNNQNRVLIRQGARELTPNEADLVNGGFITLSLCTSSPSPDGDQHVGEVGC*
Ga0126317_100494416	F081702	AGGA	MNEQDRVLIRQGARELSPEEVEQVGGGFNTLVITFGPNGRDGDGLLE*