NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0138388_1115106

Scaffold Ga0138388_1115106


Overview

Basic Information
Taxon OID3300011328 Open in IMG/M
Scaffold IDGa0138388_1115106 Open in IMG/M
Source Dataset NameMarine microbial communities from the Southern Atlantic ocean - KN S17 250_B metaT (Metagenome Metatranscriptome) (version 2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)525
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic Ocean
CoordinatesLat. (o)-28.2362Long. (o)-38.4949Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F088935Metagenome / Metatranscriptome109N

Sequences

Protein IDFamilyRBSSequence
Ga0138388_11151061F088935AGGMTSIGGLDVAFGARMQVVRTNVMCLALASTGLANSTTVPKYILNTYKEALKGTVVEPDFLYIYEIADLDGSGFTTAAVANSLFNQDNSGDGTADVTALEVNGVLRAISQCPLAVNSAFADTTAAHAAEGAAHTAHNYYDINGNL

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