NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0138355_1178788

Scaffold Ga0138355_1178788


Overview

Basic Information
Taxon OID3300011323 Open in IMG/M
Scaffold IDGa0138355_1178788 Open in IMG/M
Source Dataset NameAnoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_1300 MetaT (Metagenome Metatranscriptome) (version 2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3269
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location NameUSA: Wyoming: Yellowstone National Park
CoordinatesLat. (o)44.963Long. (o)-110.715Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007404Metagenome / Metatranscriptome351Y
F012577Metagenome / Metatranscriptome279Y
F014738Metagenome / Metatranscriptome260Y

Sequences

Protein IDFamilyRBSSequence
Ga0138355_11787881F012577N/ALSKTIWRGQIERIEEARDGSITWHALGFGALQRDARISVVQNMSDMSRWRAVGAGFLSGSGYGSRSDLWEYAVISALGVSQVEIRTKKEFVIDDYTLFFIAYLYDHPERYTKLTSTERLFVSVSQSLGLADGVWIAPVAAIPQPNAYNLTLGTVTWINTAGSVTATNCYGWVIGVRASGNETVAGNTSVTFYATINPSLILGIEDGLLAINLSGRGGCCDIKLPTGTNVSIAKPDANLREIVEQSTDEYAQVRYRRKRFLRDRALPTIDFRADSPLVWRFPETTRAVDISKAPNRVYGQYRGYWTDHLTATTMILPLESRRQSLAWRVASVGEYGSKAIAETRRDEAAVAFDRQIAPITVELDNARYELMTRDGITVPNWAADVSDYAIVPGYFRNAKITSRTISRERTTYTVSFNPDDFVNALR*
Ga0138355_11787884F007404GGAGGVDITEIFRLLAAGHTGLSALDYVWNALFGAIGAATAYLADTEGEVLLPRYDAQSNSVELGALGRVLVGAGAGVLVGYSGYIPFIAGVVAPTLLPVLVDKIAGFVGRGSNET*
Ga0138355_11787885F014738GAGGMKLDITLLTGAFFLAFVHPDAAQVAATAALLLLVTRVERGRKARKKKSAPASC*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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