Scaffold Ga0138359_1019855

Overview

Basic Information

• Taxon OID: 3300011322
• Scaffold ID: Ga0138359_1019855
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S12 250_B metaT (Metagenome Metatranscriptome) (version 2)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 708
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates
  • Lat. (^o): -28.2362
  • Long. (^o): -38.4949

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009754	Metagenome / Metatranscriptome	313	Y
F041255	Metagenome / Metatranscriptome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0138359_10198551	F041255	AGGA	MANVSDVKSKFFEPQGVSAALVSASAAATTLVIADGGPYGNLTETITLYSSADN
Ga0138359_10198552	F009754	N/A	YFETKMAVTDVGESNLWIGFAQNAYADSDTLPTDGIGFSHLQDTTTIQFVSRKNGAGVSFDMLDSAGGSTYTFEDSSIATQSATVLAVPSNPVRLGFLFQPIGSAPGVTAVQYQLFLDGKSVGTQAATTVPDDLEIGINAMIEHKGTTGNDLNVDYIQTVQQR*