NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0138371_1085595

Scaffold Ga0138371_1085595


Overview

Basic Information
Taxon OID3300011306 Open in IMG/M
Scaffold IDGa0138371_1085595 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S23 DCM_B metaT (Metagenome Metatranscriptome) (version 2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2196
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium TMED167(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)-28.2362Long. (o)-38.4949Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F067700Metagenome / Metatranscriptome125N
F082630Metagenome / Metatranscriptome113N

Sequences

Protein IDFamilyRBSSequence
Ga0138371_10855951F082630AGAAGMKNAIEIGFLAGAIFALSGCSVLEKATGWAYEAEVSTQVLPDGTEQSITNWVTKPNVKTGITIGGQLTPQPVGGIASQAILALLGIGAAIRGRQWKKAAVSGVEAAQELKQALNKSNAKGKLESILGNLKTQQKAAGT
Ga0138371_10855952F067700N/ALGVKAMTDTWGEWLKVPLVGAIGFTVTGSTIDEWLRICIAAATLVYTIAKAGSAVIEFRRKRNEKRN*

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