Scaffold Ga0138371_1038327

Overview

Basic Information

• Taxon OID: 3300011306
• Scaffold ID: Ga0138371_1038327
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S23 DCM_B metaT (Metagenome Metatranscriptome) (version 2)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 644
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates
  • Lat. (^o): -28.2362
  • Long. (^o): -38.4949

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001479	Metagenome / Metatranscriptome	687	Y
F007173	Metagenome / Metatranscriptome	356	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0138371_10383272	F001479	AGGAG	MSKEMLFLCDVYDAWLSKNKLPHRCASEILYGVDTKGKLTANQSYWLESFISTWDVIAQNT*
Ga0138371_10383273	F007173	AGGAG	MQTITKAKIKRDNLMDYIHEDRDLLMGLQDDLSDMLSATGRYSITLDEIVQNYMPFIPLYLIENEDEIKQAYPDRVTDDEYIFIYDR