Scaffold Ga0137393_10173220

Overview

Basic Information

• Taxon OID: 3300011271
• Scaffold ID: Ga0137393_10173220
• Source Dataset Name: Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1812
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005798	Metagenome	390	Y
F031179	Metagenome / Metatranscriptome	183	Y
F064950	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137393_101732202	F064950	AGGAG	MTTPSKSQSPNQQRKTTLRVFYVFVFLAIGTFTFAVRSSHASQEALIALGVVLAGGGICSFLRFLKVADTHQRLINHEATTFAFVASLLLTLIVGLLQRFGFLSGASLLISALMVAFWSIGLILFSWRYQE*
Ga0137393_101732203	F031179	N/A	MAFRGMMDDRRRYETVKSRLRAMGQGTAHQVHEAIEPSSYSVREVENTLDEMALAEQDEFEKVGEVYRWKKHYRFRAGTT*
Ga0137393_101732205	F005798	N/A	GLIEKTLSIPDAYEMFLKVGADPEVQKLRRKVAHGHKMKHVPALYLATAMALQGMTKQELEALKLRMEEKRG*