Scaffold Ga0151620_1017216

Overview

Basic Information

• Taxon OID: 3300011268
• Scaffold ID: Ga0151620_1017216
• Source Dataset Name: Sub-surface freshwater microbial communities from San Francisco Estuary Delta, California, USA . Combined Assembly of Gp0173482, Gp0175554, Gp0175555
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2535
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → The Molecular Ecology Of Microcystis Sp. Blooms In The San Francisco Estuary Delta

Source Dataset Sampling Location

• Location Name: San Francisco Estuary Delta, California, USA
• Coordinates
  • Lat. (^o): 37.986944
  • Long. (^o): -121.523611
  • Depth (m): .2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001332	Metagenome	720	Y
F006988	Metagenome	360	Y
F051123	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151620_10172163	F051123	AGGA	MNITNPPKALILLVALLCITILLATNSIDQNAGLPMISAIGFYGIGNGVAAKNGKDSPKIFGPKE*
Ga0151620_10172164	F006988	GGA	MTIRPYTGNKDAVHEKPRAGTKLFVDYCTYLFGVKNLGIFADRNMNLSGMPNPPKSVHATWRAFDLGGTVKQRYSLIDFLWVHRDILGVEEIHDYSNTYKPSKFGWGAGYRCDRDAWRVYEKNTIGSKNGQWVHVEISPLLADHPDIVAHAFKTIFQGA*
Ga0151620_10172167	F001332	AGG	MNDQMQALSAAITKADIAMKAAAWQIEQMRSDIDQMRKCLFELAYTAEEHGINLVTLTKTSQDTIVAMRLGGFK*