Scaffold Ga0151620_1014285

Overview

Basic Information

• Taxon OID: 3300011268
• Scaffold ID: Ga0151620_1014285
• Source Dataset Name: Sub-surface freshwater microbial communities from San Francisco Estuary Delta, California, USA . Combined Assembly of Gp0173482, Gp0175554, Gp0175555
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2807
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → The Molecular Ecology Of Microcystis Sp. Blooms In The San Francisco Estuary Delta

Source Dataset Sampling Location

• Location Name: San Francisco Estuary Delta, California, USA
• Coordinates
  • Lat. (^o): 37.986944
  • Long. (^o): -121.523611
  • Depth (m): .2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001507	Metagenome / Metatranscriptome	681	Y
F002935	Metagenome	519	Y
F061860	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151620_10142852	F002935	AGGA	MRERSKGYIGQIVDGKKLATIANDIYRLQYSNDFSSCTVDDLLLITLEETNVFGDNKYALVCSEGVGWEQDTYGCLEVPTNIGAMGLWNGRVFISVDTVKQCLTDQTEDIADYIRVFGDRLDNNCSLWQSKMSVADSMIEA*
Ga0151620_10142853	F001507	N/A	MTTTYKPYTIDELVTEIYEDNLSHFEFMENMNGGDCDCNLHYAMNLIVRYWGE*
Ga0151620_10142857	F061860	GAGG	MNTTQLDPRLQLAVNMGVSGTDILHGELKNMMYECEKILVPLLENSNDLGSDEEYEDTVERLYNEGYMDALTSVYALTYQLAFAIDERAKSRG*