NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151620_1012264

Scaffold Ga0151620_1012264


Overview

Basic Information
Taxon OID3300011268 Open in IMG/M
Scaffold IDGa0151620_1012264 Open in IMG/M
Source Dataset NameSub-surface freshwater microbial communities from San Francisco Estuary Delta, California, USA . Combined Assembly of Gp0173482, Gp0175554, Gp0175555
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3052
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → The Molecular Ecology Of Microcystis Sp. Blooms In The San Francisco Estuary Delta

Source Dataset Sampling Location
Location NameSan Francisco Estuary Delta, California, USA
CoordinatesLat. (o)37.986944Long. (o)-121.523611Alt. (m)Depth (m).2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008943Metagenome / Metatranscriptome325Y
F010764Metagenome / Metatranscriptome299Y
F017818Metagenome / Metatranscriptome238Y
F048261Metagenome / Metatranscriptome148Y
F091921Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0151620_10122641F048261AGAAGMTERLNHKLDVSKIKTLKDVKNVFECMSLISNASEEHEKYELIKEYFTLPNEPQELTGFKLPRKSLEEISQEFGEKIDKQIEKVKNNYRMSYDWVIAKGKYNNFCEKQDNDFNYARENGSFPLKLTLDYSKLTATGDSYISSNFVIKEGGEEVGYYTFGNGYLRYCMNKKPTPIVRFFMNKLLGFRWIDI*
Ga0151620_101226410F017818N/ATYPEHSHKWIVGLYTPDGGRFDMLHRYFGTFDTKEEAKIFAANYREKYTKPGFISSVRVFPLCEVVEDT*
Ga0151620_10122643F010764AGGAGMIEVQKNYKLTLTEDQAKQLYWILKDRKLEGDNDLKLVYHELKKLFDSGIR*
Ga0151620_10122644F091921AGGAMIELRIVENELGMKPDIQYRFMLFSVGQGGYLCPPNPDMKWSEWRTAEYVKAEEIEND*
Ga0151620_10122646F008943GGAGGMKFDEFDWFAILIIPISLIVIGGVLTYGEQQQRVLFQQTYNKNLECRQELKGQTVVRVNEICGEVPVIGDFVK*
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