Scaffold Ga0151620_1005053

Overview

Basic Information

• Taxon OID: 3300011268
• Scaffold ID: Ga0151620_1005053
• Source Dataset Name: Sub-surface freshwater microbial communities from San Francisco Estuary Delta, California, USA . Combined Assembly of Gp0173482, Gp0175554, Gp0175555
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4894
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (15.38%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → The Molecular Ecology Of Microcystis Sp. Blooms In The San Francisco Estuary Delta

Source Dataset Sampling Location

• Location Name: San Francisco Estuary Delta, California, USA
• Coordinates
  • Lat. (^o): 37.986944
  • Long. (^o): -121.523611
  • Depth (m): .2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024311	Metagenome / Metatranscriptome	206	Y
F084225	Metagenome / Metatranscriptome	112	N
F093532	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151620_10050531	F084225	N/A	MSVIIGGDKIIAHSHLPPVVFDSIQEPGKRYVIADGQWTEIPNHLGYANIIHFKKPTENSKHHAFKPTFEQEVDGSKGKKYTVKCNDDRWSCTCPAFGWSGNSGCKHIKQIKDENGWN*
Ga0151620_10050533	F093532	AGGA	MTTNSELELKCLKIEAMVRAMVMNGVTDNRKLVDAVNNYYPPLSEWEQEMFSEAIIYAKHGVLN*
Ga0151620_10050537	F024311	N/A	MSNKYEALGSNIFGFEIFEEVFKVINERGYGDQEQMFKAGVASAEAAVRRLREEYYEAISKATNE*