Scaffold Ga0151620_1003991

Overview

Basic Information

• Taxon OID: 3300011268
• Scaffold ID: Ga0151620_1003991
• Source Dataset Name: Sub-surface freshwater microbial communities from San Francisco Estuary Delta, California, USA . Combined Assembly of Gp0173482, Gp0175554, Gp0175555
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5510
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (19.05%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → The Molecular Ecology Of Microcystis Sp. Blooms In The San Francisco Estuary Delta

Source Dataset Sampling Location

• Location Name: San Francisco Estuary Delta, California, USA
• Coordinates
  • Lat. (^o): 37.986944
  • Long. (^o): -121.523611
  • Depth (m): .2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005089	Metagenome / Metatranscriptome	412	Y
F029416	Metagenome / Metatranscriptome	188	Y
F058109	Metagenome	135	Y
F087139	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151620_100399110	F005089	N/A	MNINDLYDSIKLSENLAEENYQQRNGVVDYRLDGICNHYFPLYVEGNPSYKNGEICLTTKLSKTVKGQFRYTYQINGKRIAKKLIVSEFLMLGGFN*
Ga0151620_100399111	F058109	AGCAG	MIETDFYILSGEQYQQFYTEASQLGLSIDYYLMEFCDVTGPMIEVGND*
Ga0151620_10039915	F087139	N/A	MLLSKASFNDNKVLPFIVKKEDEYTEEGNYSLHLFSRTVITKEGKKYRYLPLRFEGELARFRKRSEAEDYARYRLALD*
Ga0151620_10039917	F029416	AGGA	MTNQELSKQIYRNLFTEDQWNLIYNCIGNALDDDVFDADDVYAIRNKIHLLFD*