Scaffold Ga0151620_1002977

Overview

Basic Information

• Taxon OID: 3300011268
• Scaffold ID: Ga0151620_1002977
• Source Dataset Name: Sub-surface freshwater microbial communities from San Francisco Estuary Delta, California, USA . Combined Assembly of Gp0173482, Gp0175554, Gp0175555
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6354
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → The Molecular Ecology Of Microcystis Sp. Blooms In The San Francisco Estuary Delta

Source Dataset Sampling Location

• Location Name: San Francisco Estuary Delta, California, USA
• Coordinates
  • Lat. (^o): 37.986944
  • Long. (^o): -121.523611
  • Depth (m): .2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004477	Metagenome / Metatranscriptome	436	Y
F022885	Metagenome / Metatranscriptome	212	Y
F078710	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151620_100297711	F004477	AGAAG	MSFFSSPPITSFEQLELEKGKIQLTIMKMAAAVLGSIMVAVVFIFLIGMFMPNELIDNNEIFKIIGPAFSTIVGAFVGAFATMMGMKVTELDTNVKTQELGKTDHKELAEAHKINAEAESIETENEIKMMAAIDKYKDSDEDYGPF*
Ga0151620_10029772	F078710	GAG	MSHSSVVKENEDGELYIELSDELMEAMGWDIDTELVWTVYDDGKIGLRKRTDDHSNEA*
Ga0151620_10029775	F022885	AGGA	MTELVDNEFGVEYEQISIRKLRIFRVGKQWLVEYQRAPRLWAPWDYFWWYNDGQYVEYYDALGRVNDLKANGYANVPRFMKVKTFEVNDE*