Scaffold Ga0151620_1002135

Overview

Basic Information

• Taxon OID: 3300011268
• Scaffold ID: Ga0151620_1002135
• Source Dataset Name: Sub-surface freshwater microbial communities from San Francisco Estuary Delta, California, USA . Combined Assembly of Gp0173482, Gp0175554, Gp0175555
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7492
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (27.27%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → The Molecular Ecology Of Microcystis Sp. Blooms In The San Francisco Estuary Delta

Source Dataset Sampling Location

• Location Name: San Francisco Estuary Delta, California, USA
• Coordinates
  • Lat. (^o): 37.986944
  • Long. (^o): -121.523611
  • Depth (m): .2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004314	Metagenome / Metatranscriptome	444	Y
F015864	Metagenome / Metatranscriptome	251	Y
F037196	Metagenome / Metatranscriptome	168	Y
F071172	Metagenome / Metatranscriptome	122	Y
F071779	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151620_100213512	F015864	N/A	MTDKTELFEFLYDKCYESPELLDVILKEYVHSLSDNKLVELEDFLTNNFGDD*
Ga0151620_100213519	F071779	GAG	MKTTYRVIGFGHADHGFFNQFAFCGTIGYACGIYNAHLQDPEMDGAVIIRVRHESWEVIQEFSDYPISIVYGPLGNFKVEKSPELVMV*
Ga0151620_100213522	F004314	GAG	MYDDYDIDYTFANDYEYNLDEYYAQDVDEDYARDGQDYQDLAYRHYA*
Ga0151620_10021358	F071172	N/A	MTLTTQQLNQLVELYAERIVDDMDTKCLEQFVYDTICENMYHMGEEDVLNEIANVYDEDVIQELVESVTVE*
Ga0151620_10021359	F037196	AGAAG	MTNTTITLEQFHELLHLSYAVSVNDTLYFVGYDTDDNPYISDNDGDDYVDLSTVDGDITIDKGGAYFEIAGDPIRMVFLNIRNPLQGYPVLA*