NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151620_1001820

Scaffold Ga0151620_1001820


Overview

Basic Information
Taxon OID3300011268 Open in IMG/M
Scaffold IDGa0151620_1001820 Open in IMG/M
Source Dataset NameSub-surface freshwater microbial communities from San Francisco Estuary Delta, California, USA . Combined Assembly of Gp0173482, Gp0175554, Gp0175555
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8137
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (36.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → The Molecular Ecology Of Microcystis Sp. Blooms In The San Francisco Estuary Delta

Source Dataset Sampling Location
Location NameSan Francisco Estuary Delta, California, USA
CoordinatesLat. (o)37.986944Long. (o)-121.523611Alt. (m)Depth (m).2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013631Metagenome / Metatranscriptome269Y
F027828Metagenome / Metatranscriptome193Y
F031454Metagenome / Metatranscriptome182Y
F081258Metagenome / Metatranscriptome114Y
F091925Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0151620_100182013F031454AGGMHESTLDLFCNDNSDEIADEYALEIERKATELEVTVDYYLAEFV*
Ga0151620_100182014F081258N/AMTFTFPRLSAGIYEVQKDSNTVGFIRKATASKWIVTDVVDTPQHVTKTLKDAKDACINLIIFEVDNTPADVYNDSVEVDKINSTLNNTLEGSLRTYRQIPGTDEFEEVCPSVFGFPGPTLEPIEF*
Ga0151620_100182015F013631AGGAGMILDVFHYTTSRWDWHDGNVNQMWIQEIEQSPDCYSYVAVAYNPRKDSSMVMSEPRCYADTLQWVRKWCNSFCILPEYSVAA*
Ga0151620_10018207F091925N/AMTSISFTSGELVDIMSLIEAKEDAVYLAGDKHLAAYYMNLGCQFQRIYDKLQELPGESRVANLVLTAN*
Ga0151620_10018208F027828N/AMLIGSKSVKMMELTTETMLDTVLTIEEILTEKQLTALRDIMYFYKEFESELYNYPPEDTLFTKTQRELFDIFDIK*
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