Scaffold Ga0151620_1001275

Overview

Basic Information

• Taxon OID: 3300011268
• Scaffold ID: Ga0151620_1001275
• Source Dataset Name: Sub-surface freshwater microbial communities from San Francisco Estuary Delta, California, USA . Combined Assembly of Gp0173482, Gp0175554, Gp0175555
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9715
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (59.38%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → The Molecular Ecology Of Microcystis Sp. Blooms In The San Francisco Estuary Delta

Source Dataset Sampling Location

• Location Name: San Francisco Estuary Delta, California, USA
• Coordinates
  • Lat. (^o): 37.986944
  • Long. (^o): -121.523611
  • Depth (m): .2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000345	Metagenome / Metatranscriptome	1253	Y
F004208	Metagenome / Metatranscriptome	448	Y
F004898	Metagenome / Metatranscriptome	419	Y
F007569	Metagenome / Metatranscriptome	348	Y
F032098	Metagenome / Metatranscriptome	181	Y
F085168	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151620_100127515	F085168	N/A	MIRQLRIILWQIVSELEQRLYPYEKEDAGDYYYTVKNDETGESYMIIEWIKSFDERIIRLQDEMMYVQSQLRNLKTND*
Ga0151620_100127516	F032098	GGA	MENSDYPYHVLDSTTPWYEWLCYCEICHQLDVKGQPSMRRYMAYRNYLKSVGVL*
Ga0151620_10012752	F004898	GAGG	MDLSELLDELREIAIYETDPQDWMGYLEDDSTWVPDYELAY*
Ga0151620_100127520	F007569	GGAGG	MNFTPEQYKLIHTAVRRYQIEKTVLNSDEYQQCNEILDELFDTVYTQRVEQPT*
Ga0151620_100127527	F004208	AGGAG	MTYSLNQEAKAFSYTREELFECIAKIVAHPHKTITEHDQSRALAIMLVFEDYFSNYIQSDNNGGYCVYECDATDLTDFVKFKLGIDDYDGVDVDEVLK*
Ga0151620_10012758	F000345	GGA	MSEQQPNELGKALQEWWDSSAFKEMQKANEEAKQRAVGKYFMLSESDKLDMVQAICYIMCKAESEGTSHRGLQDALGIYPSGFWVDHLMEVHNALWSYFHDKKGEQELKDDLDALDDFVK