Scaffold Ga0151620_1000607

Overview

Basic Information

• Taxon OID: 3300011268
• Scaffold ID: Ga0151620_1000607
• Source Dataset Name: Sub-surface freshwater microbial communities from San Francisco Estuary Delta, California, USA . Combined Assembly of Gp0173482, Gp0175554, Gp0175555
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13828
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (40.91%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → The Molecular Ecology Of Microcystis Sp. Blooms In The San Francisco Estuary Delta

Source Dataset Sampling Location

• Location Name: San Francisco Estuary Delta, California, USA
• Coordinates
  • Lat. (^o): 37.986944
  • Long. (^o): -121.523611
  • Depth (m): .2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020001	Metagenome / Metatranscriptome	226	Y
F034542	Metagenome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151620_10006075	F034542	AGGCGG	VTRARNDDFGFKSFKSVDSFKNVNRVQGPDTKADLNRPLSIERRYRPALNTKDFSVTSDYDYASLWCRWRRGYELAMYGQEAYDGLSYSFKYYISNKPPLGQFLPGMCFMYPSTRTDMRMHMVAIRPRDSFNFLNFGYQISSVTQYDSTTYAVQLNERFGAPISFFTGEVVSNRFNSDGSEKEFGYNNYTITGVGFNGVPKNPSFAPVFNTLFISVDKKQSWSVVDANTLAVPATGPPAVGEYFSTEMRFQCTCPDFLAREGFNLYDASLRRKYPYTRTQNLDPGTYLAGNMQTPRVSNSSDDPGFARTFGFIYINEIYNTPRYEELTYSDTNFFYYYPKWCKHIYAAFWDMQLKYNQSNMTSSWLPQPVDEPLNEYYREYFDQQLAKQTSFLKRERDLRWWQRYSPAKDDMPTHMMYPDMYNMMEKSLNFGRGITELKASGFEMYTLDEYDPFAPSESFGTIYDNGTYSNGVQLTPPINVLDGGQYKNGVLIPPTSIPSAINGGIY*
Ga0151620_10006078	F020001	N/A	MESKNLLTIAETAELLNCSAGFVRKRIALTEANQKGGWPKTVYVNLQPHGAKALYRVNKGALEDYLQKTTSTAIVEIEDAPVACAV*