Scaffold Ga0151677_1027828

Overview

Basic Information

• Taxon OID: 3300011258
• Scaffold ID: Ga0151677_1027828
• Source Dataset Name: Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_1, permeate
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Toyama Prefectural University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5030
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (18.75%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location

• Location Name: Japan Sea near Toyama Prefecture, JAPAN
• Coordinates
  • Lat. (^o): 36.97018
  • Long. (^o): 137.37008

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010128	Metagenome / Metatranscriptome	308	Y
F069999	Metagenome	123	Y
F071136	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151677_102782813	F071136	N/A	MVFSTDKFMAEIGKQLSGIADDYIDDMCDDACSVSRRLIDETNNEKCLAHMNEISTLAEMCTNMRHDCKALESAFDGMFRREHGSGKEAATGLDAMRIITEISNDINKIAPHISWLFEDDDYIGGNIIQNIYNDSFFAPAEGQPV*
Ga0151677_102782814	F010128	N/A	MAKDNPTKPGGMRRMDELVALRSVFGNDSVLLEELVRVMSNRDAAYLFRRVAKSFDVTGALNRELDTINQR*
Ga0151677_102782815	F069999	N/A	MSILNDLIPEVKELLEADKEKFPNLHKGIINDLQNAHVTTDVKVSTANTLIGYAETANVNFESNSFILKLYNVFGR*