Scaffold Ga0151677_1018653

Overview

Basic Information

• Taxon OID: 3300011258
• Scaffold ID: Ga0151677_1018653
• Source Dataset Name: Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_1, permeate
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Toyama Prefectural University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4805
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location

• Location Name: Japan Sea near Toyama Prefecture, JAPAN
• Coordinates
  • Lat. (^o): 36.97018
  • Long. (^o): 137.37008

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009493	Metagenome	317	N
F051114	Metagenome	144	Y
F058949	Metagenome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151677_10186532	F051114	N/A	MRNKAIDKVLEHNAQLFQNLGIDSSKAEVQATKVQERKNLRSVRHYNPELIDRLINDGDK
Ga0151677_10186534	F058949	N/A	MFNNNSYEYKKAIRAKAAKAFGPTLKLDLFLEFIGFWDAREYKNANEIRTEAKDMHLYKVVSYMNQYTDG*
Ga0151677_10186539	F009493	N/A	MKTRKNKEIVLTLGKVPSLNSFYAGSHWTKRKKAKDAALKEVKEQLGFNQGPAYNSFRVTANVRYRYDLDNSIIAVKFTSDALKALGWIKDDSPKYFRRLLLVWKESLPANTAEIIITLSDEHPE*