Scaffold Ga0151677_1002709

Overview

Basic Information

• Taxon OID: 3300011258
• Scaffold ID: Ga0151677_1002709
• Source Dataset Name: Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_1, permeate
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Toyama Prefectural University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2816
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → unclassified Myoviridae → Pelagibacter phage HTVC008M (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location

• Location Name: Japan Sea near Toyama Prefecture, JAPAN
• Coordinates
  • Lat. (^o): 36.97018
  • Long. (^o): 137.37008

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048636	Metagenome	148	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151677_10027091	F048636	N/A	MDKIINKAPNDLTDYRIVKLLDGSTLVGSISLDKEFLRIQNPLQLITTPRMTEHGLKDDNTLAPWVPFTNEKMFVIPKDKVMVVSRAAKELANYYDVILTKLQQSKVKAAYSPQEINKIMEIAEQLDEEMRQREEEDNLLYDETITKTIH*