Scaffold Ga0151664_1101265

Overview

Basic Information

• Taxon OID: 3300011256
• Scaffold ID: Ga0151664_1101265
• Source Dataset Name: Marine sediment microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_4, total
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Toyama Prefectural University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 536
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Sediment → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location

• Location Name: Japan Sea near Toyama Prefecture, JAPAN
• Coordinates
  • Lat. (^o): 37.36023
  • Long. (^o): 137.9591
  • Depth (m): 570

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008307	Metagenome / Metatranscriptome	335	Y
F043149	Metagenome / Metatranscriptome	157	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151664_11012651	F043149	AGGAG	MSLRNSNTRLYNKLDAAHKKVYAAKDKGRQCVHTLKAFKEYNQLFRRIVEAEN
Ga0151664_11012652	F008307	AGCAG	MVKVLKISSLELAVDFEEIFDGASVEEATQKAHSQKMPSEFAKASITDNKLISANIKIIGEENDELKK*